Package: STEPCAM 1.2.2

STEPCAM: ABC-SMC Inference of STEPCAM

Collection of model estimation, and model plotting functions related to the STEPCAM family of community assembly models. STEPCAM is a STEPwise Community Assembly Model that infers the relative contribution of Dispersal Assembly, Habitat Filtering and Limiting Similarity from a dataset consisting of the combination of trait and abundance data. See also <http://onlinelibrary.wiley.com/wol1/doi/10.1890/14-0454.1/abstract> for more information.

Authors:Thijs Janzen [aut, cre], Fons van der Plas [aut], Thorsten Hauffe [ctb]

STEPCAM_1.2.2.tar.gz
STEPCAM_1.2.2.zip(r-4.5)STEPCAM_1.2.2.zip(r-4.4)STEPCAM_1.2.2.zip(r-4.3)
STEPCAM_1.2.2.tgz(r-4.5-any)STEPCAM_1.2.2.tgz(r-4.4-any)STEPCAM_1.2.2.tgz(r-4.3-any)
STEPCAM_1.2.2.tar.gz(r-4.5-noble)STEPCAM_1.2.2.tar.gz(r-4.4-noble)
STEPCAM_1.2.2.tgz(r-4.4-emscripten)STEPCAM_1.2.2.tgz(r-4.3-emscripten)
STEPCAM.pdf |STEPCAM.html
STEPCAM/json (API)

# Install 'STEPCAM' in R:
install.packages('STEPCAM', repos = c('https://thijsjanzen.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/thijsjanzen/stepcam/issues

On CRAN:

4.89 score 6 stars 13 scripts 163 downloads 1 mentions 24 exports 23 dependencies

Last updated 4 years agofrom:76e95ef519. Checks:1 OK, 7 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 31 2025
R-4.5-winERRORJan 31 2025
R-4.5-macERRORJan 31 2025
R-4.5-linuxERRORJan 31 2025
R-4.4-winERRORJan 31 2025
R-4.4-macERRORJan 31 2025
R-4.3-winERRORJan 31 2025
R-4.3-macERRORJan 31 2025

Exports:calcSDcalculateDistancecalculateWeightdetMnbspfallout.competitionfallout.dispersalfallout.filteringgenerate.Artificial.DatagenerateFrequenciesgenerateValuesgetFromPreviousgetRandomValsnormalizeWeightsordinationAxesperturbplot_elementplotSMCplotSTEPCAMscaleSpeciesvaluesSTEPCAMSTEPCAM_ABCstrippedDbFdternaryplot2TernPlot

Dependencies:abindade4apeclusterdigestFDgeometrygtoolslatticelinproglpSolvemagicMASSMatrixmgcvnlmepermutepixmapRcppRcppArmadilloRcppProgressspvegan

Example workflow of STEPCAM

Rendered fromSTEPCAM.Rmdusingknitr::rmarkdownon Jan 31 2025.

Last update: 2016-09-21
Started: 2016-09-20

STEPCAM: plotting results

Rendered fromSTEPCAM_plotting.Rmdusingknitr::rmarkdownon Jan 31 2025.

Last update: 2016-09-21
Started: 2016-09-20