{
  "_id": "6a1c0a111d7bb097a0a2cc4c",
  "Type": "Package",
  "Package": "STEPCAM",
  "Title": "ABC-SMC Inference of STEPCAM",
  "Version": "1.2.3",
  "Authors@R": "c(\nperson(\"Thijs\", \"Janzen\", , \"thijsjanzen@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Fons\", \"van der Plas\", role = \"aut\"),\nperson(\"Thorsten\", \"Hauffe\", role = \"ctb\")\n)",
  "Description": "Collection of model estimation, and model plotting\nfunctions related to the STEPCAM family of community assembly\nmodels. STEPCAM is a STEPwise Community Assembly Model that\ninfers the relative contribution of Dispersal Assembly, Habitat\nFiltering and Limiting Similarity from a dataset consisting of\nthe combination of trait and abundance data. See also\n<doi:10.1890/14-0454.1> for more information.",
  "License": "GPL-2",
  "URL": "https://github.com/thijsjanzen/STEPCAM",
  "BugReports": "https://github.com/thijsjanzen/STEPCAM/issues",
  "VignetteBuilder": "knitr",
  "Encoding": "UTF-8",
  "Repository": "https://thijsjanzen.r-universe.dev",
  "Date/Publication": "2025-05-06 13:31:53 UTC",
  "RemoteUrl": "https://github.com/thijsjanzen/stepcam",
  "RemoteRef": "HEAD",
  "RemoteSha": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-31 10:11:19 UTC",
    "User": "root"
  },
  "Author": "Thijs Janzen [aut, cre],\nFons van der Plas [aut],\nThorsten Hauffe [ctb]",
  "Maintainer": "Thijs Janzen <thijsjanzen@gmail.com>",
  "MD5sum": "619399335aee2d934e7a5ac929976ee4",
  "_user": "thijsjanzen",
  "_type": "src",
  "_file": "STEPCAM_1.2.3.tar.gz",
  "_fileid": "00cbab6b365c7ef3774d96c45661f89bd16cf30408223374a2eb2352307a784a",
  "_filesize": 461690,
  "_sha256": "00cbab6b365c7ef3774d96c45661f89bd16cf30408223374a2eb2352307a784a",
  "_created": "2026-05-31T10:11:19.000Z",
  "_published": "2026-05-31T10:14:41.634Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78717717044,
      "time": 176,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315880235"
    },
    {
      "job": 78717717039,
      "time": 167,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315879321"
    },
    {
      "job": 78717717047,
      "time": 144,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315877103"
    },
    {
      "job": 78717717066,
      "time": 134,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315876109"
    },
    {
      "job": 78717543273,
      "time": 195,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315862708"
    },
    {
      "job": 78717717032,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315874646"
    },
    {
      "job": 78717717094,
      "time": 150,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7315877698"
    },
    {
      "job": 78717717055,
      "time": 142,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7315876974"
    },
    {
      "job": 78717717070,
      "time": 107,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7315873615"
    }
  ],
  "_buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/thijsjanzen/stepcam",
  "_commit": {
    "id": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
    "author": "Thijs Janzen <thijsjanzen@gmail.com>",
    "committer": "Thijs Janzen <thijsjanzen@gmail.com>",
    "message": "Update README.md\n",
    "time": 1746538313
  },
  "_maintainer": {
    "name": "Thijs Janzen",
    "email": "thijsjanzen@gmail.com",
    "login": "thijsjanzen",
    "bluesky": "@thijsjanzen.bsky.social",
    "twitter": "@thijsjanzen",
    "description": "Scientific programmer at University of Groningen",
    "uuid": 19486664
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "ade4",
      "role": "Imports"
    },
    {
      "package": "ape",
      "role": "Imports"
    },
    {
      "package": "FD",
      "role": "Imports"
    },
    {
      "package": "geometry",
      "role": "Imports"
    },
    {
      "package": "grid",
      "role": "Imports"
    },
    {
      "package": "gtools",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "devtools",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    }
  ],
  "_owner": "thijsjanzen",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 6,
  "_contributors": [
    {
      "user": "thijsjanzen",
      "count": 35,
      "uuid": 19486664
    }
  ],
  "_userbio": {
    "uuid": 19486664,
    "type": "user",
    "name": "Thijs Janzen",
    "description": "Scientific programmer at University of Groningen"
  },
  "_downloads": {
    "count": 536,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/STEPCAM"
  },
  "_mentions": 1,
  "_devurl": "https://github.com/thijsjanzen/stepcam",
  "_searchresults": 12,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/readme.html",
    "extra/readme.md",
    "extra/STEPCAM.html",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/thijsjanzen/stepcam",
  "_realowner": "thijsjanzen",
  "_cranurl": true,
  "_releases": [
    {
      "version": "1.0",
      "date": "2014-06-27"
    },
    {
      "version": "1.1",
      "date": "2015-08-07"
    },
    {
      "version": "1.1.1",
      "date": "2016-03-02"
    },
    {
      "version": "1.1.2",
      "date": "2016-04-26"
    },
    {
      "version": "1.2",
      "date": "2016-09-21"
    },
    {
      "version": "1.2.3",
      "date": "2025-05-06"
    }
  ],
  "_exports": [
    "calcSD",
    "calculateDistance",
    "calculateWeight",
    "detMnbsp",
    "fallout.competition",
    "fallout.dispersal",
    "fallout.filtering",
    "generate.Artificial.Data",
    "generateFrequencies",
    "generateValues",
    "getFromPrevious",
    "getRandomVals",
    "normalizeWeights",
    "ordinationAxes",
    "perturb",
    "plot_element",
    "plotSMC",
    "plotSTEPCAM",
    "scaleSpeciesvalues",
    "STEPCAM",
    "STEPCAM_ABC",
    "strippedDbFd",
    "ternaryplot2",
    "TernPlot"
  ],
  "_help": [
    {
      "page": "STEPCAM-package",
      "title": "ABC-SMC Inference of STEPCAM",
      "topics": [
        "STEPCAM-package"
      ]
    },
    {
      "page": "generate.Artificial.Data",
      "title": "Generate Artifical data that can be used by the STEPCAM model",
      "topics": [
        "generate.Artificial.Data"
      ]
    },
    {
      "page": "plotSMC",
      "title": "Plot the progression of the SMC algorithm.",
      "topics": [
        "plotSMC"
      ]
    },
    {
      "page": "plotSTEPCAM",
      "title": "Plot the output generated by the STEPCAM_ABC function",
      "topics": [
        "plotSTEPCAM"
      ]
    },
    {
      "page": "STEPCAM_ABC",
      "title": "ABC-SMC inference of the STEPCAM model",
      "topics": [
        "STEPCAM_ABC"
      ]
    },
    {
      "page": "TernPlot",
      "title": "Create a ternary plot from results of the STEPCAM_ABC function",
      "topics": [
        "TernPlot"
      ]
    }
  ],
  "_readme": "https://github.com/thijsjanzen/stepcam/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "ade4",
    "ape",
    "cluster",
    "digest",
    "FD",
    "geometry",
    "gtools",
    "lattice",
    "linprog",
    "lpSolve",
    "magic",
    "MASS",
    "Matrix",
    "mgcv",
    "nlme",
    "permute",
    "pixmap",
    "Rcpp",
    "RcppArmadillo",
    "RcppProgress",
    "sp",
    "vegan"
  ],
  "_vignettes": [
    {
      "source": "STEPCAM.Rmd",
      "filename": "STEPCAM.html",
      "title": "Example workflow of STEPCAM",
      "author": "Thijs Janzen",
      "engine": "knitr::rmarkdown",
      "headings": [
        "What is STEPCAM",
        "Required data",
        "Starting STEPCAM"
      ],
      "created": "2016-09-20 15:10:41",
      "modified": "2016-09-21 14:50:24",
      "commits": 2
    },
    {
      "source": "STEPCAM_plotting.Rmd",
      "filename": "STEPCAM_plotting.html",
      "title": "STEPCAM: plotting results",
      "author": "Thijs Janzen",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Aim of this vignette",
        "Data and STEPCAM"
      ],
      "created": "2016-09-20 15:10:41",
      "modified": "2016-09-21 14:50:24",
      "commits": 2
    }
  ],
  "_score": 4.857332496431269,
  "_indexed": true,
  "_nocasepkg": "stepcam",
  "_universes": [
    "thijsjanzen"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.2.3",
      "date": "2026-05-31T10:13:43.000Z",
      "distro": "noble",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "7be1a5fc339590904d1f53ab30d8c2df219fe995aea582fbf4b9b707bfc868bc",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.2.3",
      "date": "2026-05-31T10:13:35.000Z",
      "distro": "noble",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "15e8213bc46eab181356233196d7bc11c666d9db9e7e511ff820d1212dd6989d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.2.3",
      "date": "2026-05-31T10:13:14.000Z",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "222df92e0a6f5e20b53ce8b5e4ff4f766aaf1d91c4943354cdb3a0a910292b04",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.2.3",
      "date": "2026-05-31T10:13:07.000Z",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "a1eefe9a8ec87b9c26d202e26d54d6eee24b0b56fee0d0901ef700997910b18d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.2.3",
      "date": "2026-05-31T10:13:32.000Z",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "f9df40fde9697247800cdb67e31af346be33486c5a7ada1265382f301ec6490d",
      "status": "success",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.2.3",
      "date": "2026-05-31T10:12:48.000Z",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "907a625d76579c68992835a12ee62a5da66b38a2173db06bf86aac007bf75ad0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.2.3",
      "date": "2026-05-31T10:12:46.000Z",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "4ccb0722c76f77b11618030d0e52d304e20562d2759ddcb6e9c21e7bfd960824",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.2.3",
      "date": "2026-05-31T10:12:27.000Z",
      "commit": "3dc6eff5a4cb665f82f4e2cde3251af1ca2fbb25",
      "fileid": "81a139088f877234dd85f102275099361fa4791ba6514c703c000d90d6a8c228",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/thijsjanzen/actions/runs/26709711797"
    }
  ]
}